fanta.bio (Functional genome ANnotations with Transcriptional Activities) is a database that collects functional annotations of genomes for studying gene regulation, with a primary focus on cis-regulatory elements (CREs) such as promoters and enhancers. This track display the CREs identified in fanta.bio.
Identification of potential CREs in fanta.bio is based on transcription signatures. Both promoters and enhancers produce specific sets of RNAs, including mRNA, lncRNA, uaRNA (upstream antisense RNA), and eRNA (enhancer RNA). These transcription signatures are effectively used in the course of the identification. The pioneering work of transcriptome-based CRE identification was carried out in the FANTOM5 project, and we here applied an advanced approach to an expanded dataset. We additionally collect relevant resources, such as genome binding sites of transcription factors (“trans” factors) and genome variations across individuals.
Please refer the download archive for further details, including the release notes, data source, etc.
All data produced by fanta.bio is distributed under the CC-BY 4.0 license. When you use the data and/or the website, please attribute fanta.bio as the source.
fanta.bio: a database of functional genome annotations with transcriptional activities, https://fanta.bio/, 2024.
If you have any questions or need assistance, please feel free to contact us at help [at] fanta.bio.
The construction and maintenance of fanta.bio is a collaborative effort of the following three labs:
fanta.bio is supported by JST NBDC Grant Number JPMJND2202 in Database Integration Coordination Program (DICP)