track integratedCrePeaks
shortLabel CRE Integrated Tracks
longLabel CRE Integrated Tracks
superTrack on show
priority 1
visibility dense
html IntegratedCrePeaks.html

    track IntegratedCAGECRE
    bigDataUrl IntegratedCAGECRE.bigBed
    shortLabel CAGE CRE
    longLabel Integrated CAGE CRE peaks
    type bigBed 9
    itemRgb on
    parent integratedCrePeaks on
    html IntegratedCrePeaks.html
    priority 1.1

    track IntegratedNETCAGECRE
    bigDataUrl IntegratedNETCAGECRE.bigBed
    shortLabel NET-CAGE CRE
    longLabel Integrated NET-CAGE CRE peaks
    type bigBed 9
    itemRgb on
    parent integratedCrePeaks on
    html IntegratedCrePeaks.html
    priority 1.2

    track integratedCageTotal
    shortLabel CAGE total TSS
    longLabel Integrated CAGE total TSS activity
    type bigWig
    visibility full
    priority 2
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent integratedCrePeaks on
    container multiWig
    html mm10IntegratedTSSActivity.html
    priority 1.3

        track CAGEpooltotalctssrev
        bigDataUrl IntegratedCAGEctssrev.bigWig
        shortLabel CAGE pool total rev
        longLabel CAGE pooltotal rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on
        parent integratedCageTotal on

        track CAGEpooltotalctssfwd
        bigDataUrl IntegratedCAGEctssfwd.bigWig
        shortLabel CAGE pool total fwd
        longLabel CAGE pool total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on
        parent integratedCageTotal on

    track integratedNetCageTotal
    shortLabel NET-CAGE total TSS
    longLabel Integrated NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent integratedCrePeaks on
    container multiWig
    html mm10IntegratedTSSActivity.html
    priority 1.4

        track NETCAGEpooltotalctssrev
        bigDataUrl IntegratedNETCAGEctssrev.bigWig
        shortLabel NET-CAGE pool total rev
        longLabel NET-CAGE pool total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on
        parent integratedNetCageTotal on

        track NETCAGEpooltotalctssfwd
        bigDataUrl IntegratedNETCAGEctssfwd.bigWig
        shortLabel NET-CAGE pool total fwd
        longLabel NET-CAGE pool total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on
        parent integratedNetCageTotal on


track CrePeaksComposite
shortLabel CRE Individual Peaks
longLabel CRE Individual Peaks
type bigBed
visibility hide
subGroup1 CellType CellType GM12878=GM12878 HeLaS3=HeLaS3 HepG2=HepG2 K-562=K-562 MCF-7=MCF-7
subGroup2 Protocol Protocol CAGE=CAGE NETCAGE=NET-CAGE
dimensions dimX=Protocol dimY=CellType
sortOrder CellType=+ Protocol=+
compositeTrack off
priority 2
html CrePeaks.html

    track GM12878CAGECRE
    bigDataUrl GM12878CAGECRE.bigBed
    shortLabel GM12878 CAGE CRE
    longLabel GM12878 CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=GM12878 Protocol=CAGE
    parent CrePeaksComposite
    priority 2.1
    
    track GM12878NETCAGECRE
    bigDataUrl GM12878NETCAGECRE.bigBed
    shortLabel GM12878 NET-CAGE CRE
    longLabel GM12878 NET-CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=GM12878 Protocol=NETCAGE
    parent CrePeaksComposite
    priority 2.2

    track HeLaS3CAGECRE
    bigDataUrl HeLaS3CAGECRE.bigBed
    shortLabel HeLa S3 CAGE CRE
    longLabel HeLa S3 CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=HeLaS3 Protocol=CAGE
    parent CrePeaksComposite
    priority 2.3
    
    track HeLaS3NETCAGECRE
    bigDataUrl HeLaS3NETCAGECRE.bigBed
    shortLabel HeLa S3 NET-CAGE CRE
    longLabel HeLa S3 NET-CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=HeLaS3 Protocol=NETCAGE
    parent CrePeaksComposite
    priority 2.4

    track HepG2CAGECRE
    bigDataUrl HepG2CAGECRE.bigBed
    shortLabel Hep G2 CAGE CRE
    longLabel Hep G2 CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=HepG2 Protocol=CAGE
    parent CrePeaksComposite
    priority 2.5
    
    track HepG2NETCAGECRE
    bigDataUrl HepG2NETCAGECRE.bigBed
    shortLabel Hep G2 NET-CAGE CRE
    longLabel Hep G2 NET-CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=HepG2 Protocol=NETCAGE
    parent CrePeaksComposite
    priority 2.6

    track K562CAGECRE
    bigDataUrl K562CAGECRE.bigBed
    shortLabel K-562 CAGE CRE
    longLabel K-562 CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=K-562 Protocol=CAGE
    parent CrePeaksComposite
    priority 2.7
    
    track K562NETCAGECRE
    bigDataUrl K562NETCAGECRE.bigBed
    shortLabel K-562 NET-CAGE CRE
    longLabel K-562 NET-CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=K-562 Protocol=NETCAGE
    parent CrePeaksComposite
    priority 2.8

    track MCF7CAGECRE
    bigDataUrl MCF7CAGECRE.bigBed
    shortLabel MCF-7 CAGE CRE
    longLabel MCF-7 CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=MCF-7 Protocol=CAGE
    parent CrePeaksComposite
    priority 2.9
    
    track MCF7NETCAGECRE
    bigDataUrl MCF7NETCAGECRE.bigBed
    shortLabel MCF-7 NET-CAGE CRE
    longLabel MCF-7 NET-CAGE CRE peaks
    type bigBed 9
    visibility dense
    itemRgb on
    subGroups CellType=MCF-7 Protocol=NETCAGE
    parent CrePeaksComposite
    priority 2.10

track tssIndividualActivities
shortLabel TSS Individual Activities
longLabel TSS Individual Activities
visibility full
superTrack on
html TSSActivity.html
priority 3

    track GM12878CAGE
    shortLabel GM12878 CAGE
    longLabel GM12878 CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.1

        track GM12878CAGEtotalctssrev
        bigDataUrl GM12878CAGEtotalctssrev.bigWig
        shortLabel GM12878 CAGE total rev
        longLabel GM12878 CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on       
        parent GM12878CAGE

        track GM12878CAGEtotalctssfwd
        bigDataUrl GM12878CAGEtotalctssfwd.bigWig
        shortLabel GM12878 CAGE total fwd
        longLabel GM12878 CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent GM12878CAGE

    track GM12878NETCAGE
    shortLabel GM12878 NET-CAGE
    longLabel GM12878 NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.2

        track GM12878NETCAGEtotalctssrev
        bigDataUrl GM12878NETCAGEtotalctssrev.bigWig
        shortLabel GM12878 NET-CAGE total rev
        longLabel GM12878 NET-CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent GM12878NETCAGE

        track GM12878NETCAGEtotalctssfwd
        bigDataUrl GM12878NETCAGEtotalctssfwd.bigWig
        shortLabel GM12878 NET-CAGE total fwd
        longLabel GM12878 NET-CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent GM12878NETCAGE

    track HeLaS3CAGE
    shortLabel HeLa S3 CAGE
    longLabel HeLa S3 CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.3

        track HeLaS3CAGEtotalctssrev
        bigDataUrl HeLaS3CAGEtotalctssrev.bigWig
        shortLabel HeLa S3 CAGE total rev
        longLabel HeLa S3 CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent HeLaS3CAGE

        track HeLaS3CAGEtotalctssfwd
        bigDataUrl HeLaS3CAGEtotalctssfwd.bigWig
        shortLabel HeLa S3 CAGE total fwd
        longLabel HeLa S3 CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent HeLaS3CAGE

    track HeLaS3NETCAGE
    shortLabel HeLa S3 NET-CAGE
    longLabel HeLa S3 NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.4

        track HeLaS3NETCAGEtotalctssrev
        bigDataUrl HeLaS3NETCAGEtotalctssrev.bigWig
        shortLabel HeLa S3 NET-CAGE total rev
        longLabel HeLa S3 NET-CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent HeLaS3NETCAGE

        track HeLaS3NETCAGEtotalctssfwd
        bigDataUrl HeLaS3NETCAGEtotalctssfwd.bigWig
        shortLabel HeLa S3 NET-CAGE total fwd
        longLabel HeLa S3 NET-CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent HeLaS3NETCAGE

    track HepG2CAGE
    shortLabel Hep G2 CAGE
    longLabel Hep G2 CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.5

        track HepG2CAGEtotalctssrev
        bigDataUrl HepG2CAGEtotalctssrev.bigWig
        shortLabel Hep G2 CAGE total rev
        longLabel Hep G2 CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent HepG2CAGE

        track HepG2CAGEtotalctssfwd
        bigDataUrl HepG2CAGEtotalctssfwd.bigWig
        shortLabel Hep G2 CAGE total fwd
        longLabel Hep G2 CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent HepG2CAGE

    track HepG2NETCAGE
    shortLabel Hep G2 NET-CAGE
    longLabel Hep G2 NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.6

        track HepG2NETCAGEtotalctssrev
        bigDataUrl HepG2NETCAGEtotalctssrev.bigWig
        shortLabel Hep G2 NET-CAGE total rev
        longLabel Hep G2 NET-CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent HepG2NETCAGE

        track HepG2NETCAGEtotalctssfwd
        bigDataUrl HepG2NETCAGEtotalctssfwd.bigWig
        shortLabel Hep G2 NET-CAGE total fwd
        longLabel Hep G2 NET-CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent HepG2NETCAGE

    track K562CAGE
    shortLabel K-562 CAGE
    longLabel K-562 CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.7

        track K562CAGEtotalctssrev
        bigDataUrl K562CAGEtotalctssrev.bigWig
        shortLabel K-562 CAGE total rev
        longLabel K-562 CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent K562CAGE

        track K562CAGEtotalctssfwd
        bigDataUrl K562CAGEtotalctssfwd.bigWig
        shortLabel K-562 CAGE total fwd
        longLabel K-562 CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent K562CAGE

    track K562NETCAGE
    shortLabel K-562 NET-CAGE
    longLabel K-562 NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.8

        track K562NETCAGEtotalctssrev
        bigDataUrl K562NETCAGEtotalctssrev.bigWig
        shortLabel K-562 NET-CAGE total rev
        longLabel K-562 NET-CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent K562NETCAGE

        track K562NETCAGEtotalctssfwd
        bigDataUrl K562NETCAGEtotalctssfwd.bigWig
        shortLabel K-562 NET-CAGE total fwd
        longLabel K-562 NET-CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent K562NETCAGE

    track MCF7CAGE
    shortLabel MCF-7 CAGE
    longLabel MCF-7 CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.9

        track MCF7CAGEtotalctssrev
        bigDataUrl HepG2CAGEtotalctssrev.bigWig
        shortLabel MCF-7 CAGE total rev
        longLabel MCF-7 CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent MCF7CAGE

        track MCF7CAGEtotalctssfwd
        bigDataUrl MCF7CAGEtotalctssfwd.bigWig
        shortLabel MCF-7 CAGE total fwd
        longLabel MCF-7 CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent MCF7CAGE

    track MCF7NETCAGE
    shortLabel MCF-7 NET-CAGE
    longLabel MCF-7 NET-CAGE total TSS activity
    type bigWig
    visibility full
    maxHeightPixels 8:80:128    
    aggregate transparentOverlay
    autoScale on
    showSubtrackColorOnUi on
    parent tssIndividualActivities
    container multiWig
    priority 3.10

        track MCF7NETCAGEtotalctssrev
        bigDataUrl MCF7NETCAGEtotalctssrev.bigWig
        shortLabel MCF-7 NET-CAGE total rev
        longLabel MCF-7 NET-CAGE total rev
        type bigWig
        visibility full
        color 0,0,255
        autoScale on        
        parent MCF7NETCAGE

        track MCF7NETCAGEtotalctssfwd
        bigDataUrl MCF7NETCAGEtotalctssfwd.bigWig
        shortLabel MCF-7 NET-CAGE total fwd
        longLabel MCF-7 NET-CAGE total fwd
        type bigWig
        visibility full
        color 255,0,0
        autoScale on        
        parent MCF7NETCAGE


track chipAtlas
shortLabel ChIP-Atlas
longLabel ChIP-Atlas
superTrack on
visibility hide
priority 4
html ChIPAtlas.html

    track GM12878ChIP-Atlas
    bigDataUrl GM12878ChIP-Atlas.bigBed
    shortLabel GM12878 ChIP-Atlas
    longLabel GM12878 ChIP-Atlas
    type bigBed 5
    spectrum on
    urlLabel ChIP-Atlas IGV Track View:
    url http://localhost:60151/load?genome=$D&file=https://chip-atlas.dbcls.jp/data/$D/assembled/Oth.Brs.05.$$.AllCell.bed&locus=chr$s:${-$}
    parent chipAtlas
    priority 4.1

    track HeLaS3ChIP-Atlas
    bigDataUrl HeLaS3ChIP-Atlas.bigBed
    shortLabel HeLa S3 ChIP-Atlas
    longLabel HeLa S3 ChIP-Atlas
    type bigBed 5
    spectrum on
    urlLabel ChIP-Atlas IGV Track View:
    url http://localhost:60151/load?genome=$D&file=https://chip-atlas.dbcls.jp/data/$D/assembled/Oth.Brs.05.$$.AllCell.bed&locus=chr$s:${-$}
    parent chipAtlas
    priority 4.2

    track HepG2ChIP-Atlas
    bigDataUrl HepG2ChIP-Atlas.bigBed
    shortLabel Hep G2 ChIP-Atlas
    longLabel Hep G2 ChIP-Atlas
    type bigBed 5
    spectrum on
    urlLabel ChIP-Atlas IGV Track View:
    url http://localhost:60151/load?genome=$D&file=https://chip-atlas.dbcls.jp/data/$D/assembled/Oth.Brs.05.$$.AllCell.bed&locus=chr$s:${-$}
    parent chipAtlas
    priority 4.3

    track K562ChIP-Atlas
    bigDataUrl K562ChIP-Atlas.bigBed
    shortLabel K-562 ChIP-Atlas
    longLabel K-562 ChIP-Atlas
    type bigBed 5
    spectrum on
    urlLabel ChIP-Atlas IGV Track View:
    url http://localhost:60151/load?genome=$D&file=https://chip-atlas.dbcls.jp/data/$D/assembled/Oth.Brs.05.$$.AllCell.bed&locus=chr$s:${-$}
    parent chipAtlas
    priority 4.4

    track MCF7ChIP-Atlas
    bigDataUrl MCF7ChIP-Atlas.bigBed
    shortLabel MCF-7 ChIP-Atlas
    longLabel MCF-7 ChIP-Atlas
    type bigBed 5
    spectrum on
    urlLabel ChIP-Atlas IGV Track View:
    url http://localhost:60151/load?genome=$D&file=https://chip-atlas.dbcls.jp/data/$D/assembled/Oth.Brs.05.$$.AllCell.bed&locus=chr$s:${-$}
    parent chipAtlas
    priority 4.5